PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_022632-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB_related
Protein Properties Length: 126aa    MW: 13698.2 Da    PI: 4.4877
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_022632-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07347646
                     HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  6 teEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqk 46
                     +eE++ +  a++++        +W++Ia++++  +t  ++k ++  
    NNU_022632-RA  3 KEEEKAFEAAIAMHWAAddskdRWEKIASMVP-SKTVAELKKHYEV 47
                     79************99999*************.**********965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.600.001348IPR009057Homeodomain-like
SuperFamilySSF466891.45E-7356IPR009057Homeodomain-like
CDDcd001674.89E-8349No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MRKEEEKAFE AAIAMHWAAD DSKDRWEKIA SMVPSKTVAE LKKHYEVLVE DVDAIESGQI  60
PIPTYVKEEA ASSKDQHLFP ASASGATDKR LNCNFGIGFS GLGTDSAGLA SDPTQVGLNS  120
EQELKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-154791487RADIALIS
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241943.12e-84PREDICTED: protein RADIALIS-like 6
TrEMBLV5T6Q56e-40V5T6Q5_ARAHY; Putative MYB-related protein 28
STRINGGLYMA17G13010.14e-36(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-15MYB family protein